| GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) Mario Pineda-Krch , Robrecht Cannoodt |
| GillespieSSA2 | Gillespie's Stochastic Simulation Algorithm for Impatient People Robrecht Cannoodt , Wouter Saelens |
| SCORPIUS | Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data Robrecht Cannoodt , Wouter Saelens |
| anndata | 'anndata' for R Philipp Angerer , Alex Wolf , Isaac Virshup , Sergei Rybakov , Robrecht Cannoodt |
| babelwhale | Talking to 'Docker' and 'Singularity' Containers Robrecht Cannoodt , Wouter Saelens , Joel Nitta |
| badger | Badge for R Package Guangchuang Yu , Gregor de Cillia , Dirk Eddelbuettel , Maëlle Salmon , Robrecht Cannoodt , Alexander Rossell Hayes , Waldir Leoncio |
| diffusionMap | Diffusion Map Joseph Richards , Robrecht Cannoodt |
| dyndimred | Dimensionality Reduction Methods in a Common Format Robrecht Cannoodt , Wouter Saelens |
| dynfeature | Feature Importance for Dynamic Processes Robrecht Cannoodt , Wouter Saelens |
| dyngen | A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses Robrecht Cannoodt , Wouter Saelens |
| dynparam | Creating Meta-Information for Parameters Robrecht Cannoodt , Wouter Saelens |
| dynplot | Visualising Single-Cell Trajectories Robrecht Cannoodt , Wouter Saelens |
| dynutils | Common Functionality for the 'dynverse' Packages Robrecht Cannoodt , Wouter Saelens |
| dynwrap | Representing and Inferring Single-Cell Trajectories Robrecht Cannoodt , Wouter Saelens |
| funkyheatmap | Generating Funky Heatmaps for Data Frames Robrecht Cannoodt , Wouter Saelens |
| ggrepel | Automatically Position Non-Overlapping Text Labels with 'ggplot2' Kamil Slowikowski , Alicia Schep , Sean Hughes , Trung Kien Dang , Saulius Lukauskas , Jean-Olivier Irisson , Zhian N Kamvar , Thompson Ryan , Dervieux Christophe , Yutani Hiroaki , Pierre Gramme , Amir Masoud Abdol , Malcolm Barrett , Robrecht Cannoodt , Michał Krassowski , Michael Chirico , Pedro Aphalo , Francis Barton |
| graphsim | Simulate Expression Data from 'igraph' Networks S. Thomas Kelly , Michael A. Black , Robrecht Cannoodt , Jason Cory Brunson |
| incgraph | Incremental Graphlet Counting for Network Optimisation Robrecht Cannoodt |
| lmds | Landmark Multi-Dimensional Scaling Robrecht Cannoodt , Wouter Saelens |
| princurve | Fit a Principal Curve in Arbitrary Dimension Trevor Hastie , Andreas Weingessel , Kurt Hornik , Henrik Bengtsson , Robrecht Cannoodt |
| proxyC | Computes Proximity in Large Sparse Matrices Kohei Watanabe , Robrecht Cannoodt |
| qsub | Running Commands Remotely on 'Gridengine' Clusters Robrecht Cannoodt , Wouter Saelens |
| rticles | Article Formats for R Markdown JJ Allaire , Yihui Xie , Christophe Dervieux , Posit Software , PBC , R Foundation , Hadley Wickham , Journal of Statistical Software , Ramnath Vaidyanathan , Association for Computing Machinery , Carl Boettiger , Elsevier , Karl Broman , Kirill Mueller , Bastiaan Quast , Randall Pruim , Ben Marwick , Charlotte Wickham , Oliver Keyes , Miao Yu , Daniel Emaasit , Thierry Onkelinx , Alessandro Gasparini , Marc-Andre Desautels , Dominik Leutnant , MDPI , Taylor , Francis , Oğuzhan Öğreden , Dalton Hance , Daniel Nüst , Petter Uvesten , Elio Campitelli , John Muschelli , Alex Hayes , Zhian N. Kamvar , Noam Ross , Robrecht Cannoodt , Duncan Luguern , David M. Kaplan , Sebastian Kreutzer , Shixiang Wang , Jay Hesselberth , Alfredo Hernández , Stefano Coretta , Greg Macfarlane , Matthias Templ , Alvaro Uzaheta , JooYoung Seo , Callum Arnold , Rob Hyndman , Dmytro Perepolkin , Tom Palmer |